A. pisum classifier-identified bicycle genes expression scripts

software

posted on 2022-01-08, 02:56 authored by David Stern, Clair HanClair Han

Code for generating the A. pisum bicycle genes characterizations and expression analysis from publication "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719.

Apis_cluster_analysis_mathers_v5.5.6_22xii21.Rmd takes Apis_bicycle_classifier_0.72cutoff_genenames_v5.5.6_run2.txt as input and generates figure panel 5A.

runlog_Apis_RNAseq.sh and it's corresponding plotting script Apis_DE_analysis_mathers_v5.5.6_22xii21.Rmd generate figure panels 5B and 6E.

Please contact Clair Han at hanc@janelia.hhmi.org with questions.

See related materials in collection at https://doi.org/10.25378/janelia.c.5778905.