bicycle genes identification in outgroup species scripts

Code for characterizing linear regression classifier-identified bicycle genes in seven outgroups species, from publication "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719.

Other_spp_logos_v5.5.6.Rmd generates figure panels S9C-F and S10A-C.

Input files available on Janelia Figshare at https://doi.org/10.25378/janelia.17783336 and

https://doi.org/10.25378/janelia.17777888

Plot_Genomevsbicyclenum_v5.5.6.Rmd generates figure panel S9A.

Please contact Clair Han at hanc@janelia.hhmi.org with questions.

See related materials in collection at https://doi.org/10.25378/janelia.c.5778905.