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18 files

Multi-sequence alignment files

dataset
posted on 11.04.2022, 19:53 authored by David L.SternDavid L.Stern, Clair HanClair Han

Multisequence alignment files for sequence logos in manuscript "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719.


Please contact Clair Han at hanc@janelia.hhmi.org with any questions.

See related materials in collection at https://doi.org/10.25378/janelia.c.5778905.


Hcor

Fig 2B: Hcor_gene_cluster1_v5.5.6.mafft_auto.trimal_30.fa

Fig 2C: Hcor_gene_cluster2_v5.5.6.mafft_auto.trimal_50.fa


Fig 3B: Hcor_bicycle_gene_100_v5.5.6ii.mafft_auto.fa

Fig 3C: Hcor_bicycle_gene_200_v5.5.6ii.mafft_auto.fa

Fig 3D: Hcor_bicycle_gene_300_v5.5.6ii.mafft_auto.fa

Fig 3E: Hcor_bicycle_gene_400_v5.5.6ii.mafft_auto.fa


Tnig

Fig 4B: Tnig_gene_cluster1_v5.5.6.mafft_auto.fa

Fig 4C: Tnig_gene_cluster2_v5.5.6.mafft_auto.fa

Fig 4D: Tnig_gene_cluster3_v5.5.6.mafft_auto.fa

Fig 4E: Tnig_gene_cluster4_v5.5.6.mafft_auto.fa


Apis

Fig 5A: Apis_bicycle_gene_100_200_v5.5.6.Mathers.mafft_auto.fa


Mper

Fig S9C: Mper.bicycle_gene_200_v5.5.6.mafft_auto.fa


Pnig

Fig S9D: Pnig.bicycle_gene_100_v5.5.6.mafft_auto.fa


Rmai

Fig S9E: Rmai.bicycle_gene_200_v5.5.6.mafft_auto.fa


Cced

Fig S9F: Cced.bicycle_gene_200_v5.5.6.mafft_auto.fa


Dvit

Fig S10A: Dvit.bicycle_gene_v5.5.6.mafft_auto.fa


Mhir

Fig S10B: Mhir.bicycle_gene_v5.5.6.mafft_auto.fa


Psol

Fig S10C: Psol.gene_v5.5.6.mafft_auto.fa



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