Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse pancreas (jrc_mus-pancreas-4)
Segmentation description: Nuclei segmentations in jrc_mus-pancreas-4 using Cellpose 2.0 with minimal manual corrections.
Software program: Cellpose 2.0
Software program DOI: https://doi.org/10.1038/s41592-022-01663-4
GPU: RTX A6000
RAM: 256.0 GiB
Label voxel size (nm): 128 x 128 x 128 (x, y, z)
Reconstructed data dimensions (µm): 146.23, 113.04 , 115.045 (x, y, z)
Classes annotated: Nucleus
Source dataset (EM) ID: jrc_mus-pancreas-4
Source dataset (EM) voxel size (nm): 8.0 x 8.0 x 8.0 (x, y, z)
Source dataset (EM) data dimensions (µm): 146.27, 113.04 , 115.05 (x, y, z)
Source dataset (EM) DOI: https://doi.org/10.25378/janelia.23411843
Dataset URL: https://data.janelia.org/mR8HH
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-4