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Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse thymus (jrc_mus-thymus-1)
dataset
posted on 2024-03-12, 20:17 authored by CellMap Project TeamCellMap Project Team, David Ackerman, Jeff Rhoades, Aubrey WeigelAubrey Weigel, Yurii ZubovSegmentation description: Nuclei segmentations in jrc_mus-thymus-1 using Cellpose 2.0 with minimal manual corrections.
Software: Cellpose 2.0
Software DOI: https://doi.org/10.1038/s41592-022-01663-4
GPU: RTX A6000
RAM: 256.0 GiB
Label voxel size (nm): 128 x 128 x 128 (x, y, z)
Reconstructed data dimensions (µm): 147.2 x 116.3 x 116.0 (x, y, z)
Classes annotated: Nucleus
Source dataset (EM) ID: jrc_mus-thymus-1
Source dataset (EM) voxel size (nm): 8 x 8 x 8 (x, y, z)
Source dataset (EM) data dimensions (µm): 147.2 x 116.3 x 116.0 (x, y, z)
Source dataset (EM) DOI: https://doi.org/10.25378/janelia.24085287
Dataset URL: https://data.janelia.org/mdfe6
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-thymus-1
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