23 files

Whole transcriptome annotation files

posted on 26.07.2022, 20:06 authored by David Stern, Clair HanClair Han

These are the manually corrected BRAKER annotations in GFF3 format, from Table S5 of "Gene Structure-Based Homology Search Identifies Highly Divergent Putative Effector Gene Family", Stern and Han, https://doi.org/10.1093/gbe/evac069

Please contact Clair Han at hanc@janelia.hhmi.org with any questions.

See related materials in collection at: https://doi.org/10.25378/janelia.c.5778905.

Please note update for Hormaphis cornus GFF (7/26/22):

-The manuscript lists Augustus.updated_w_

annots.19viii21_final.gff3 as the GFF used. The correct version should be Augustus.updated_w_annots.3ix21_final.gff3. There are very few changes between these version.

-This GFF has since then been further updated to Augustus.updated_w_annots.1vii22_final.gff3.

Both Augustus.updated_w_annots.3ix21_final.gff3 and Augustus.updated_w_annots.1vii22_final.gff3 are provided.