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Hormaphis cornu amplicon sequencing script

journal contribution
posted on 30.12.2020, 21:54 by Aishwarya Korgaonkar, Clair HanClair Han, David Stern
Code used in analysis of the PCR amplicon sequencing data of the significant GWAS SNPs in dgc gene, associated with the publication "A novel family of secreted insect proteins linked to plant gall development" by Korgaonkar et al. (2021). amplicon_seq_haplotypes.R uses Hcor_ampliconSeq_plates1-12_shortRef_gatk_v2+bcftools_genotypes_manualEdited_AK.tsv as input and generates figure 2E.

Please contact Clair Han at hanc@janelia.hhmi.org with questions.