Automatic vascular segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse heart (jrc_mus-heart-1) model
Model description: Cellpose 2.0 was trained on extracellular space from 12 2D slices from jrc_mus-heart-1.
Architecture: Cellpose 2.0
Input voxel size (nm): 128 x 128 x 128 (X, Y, Z)
Output voxel size (nm): 128 x 128 x 128 (X, Y, Z)
Classes trained on: Extracellular space
GPU: NVIDIA TITAN RTX
RAM: 768.0 GiB
Wall time (sec): 2281.27
Software: Cellpose 2.0
Software DOI: https://doi.org/10.1038/s41592-022-01663-4
Source dataset (EM) ID: jrc_mus-heart-1
Source dataset (EM) DOI: https://doi.org/10.25378/janelia.24020919
Generated dataset DOI: https://doi.org/10.25378/janelia.25374010
Model URL (redirect): https://data.janelia.org/efZGR
Github repo: https://github.com/janelia-cellmap/cellmap-models
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-heart-1