1/1
8 files

Selection signatures in classifier-identified bicycle genes scripts

software
posted on 08.01.2022, 02:54 by David Stern, Clair HanClair Han
Code used for identifying signatures of positive selection in H. cornu bicycle genes, for the publication "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719.

bicycle_classifier_Hcor_Hham_DnDs_3ix21.Rmd
generates Figure S4A-C
bicycle_classifier_Sweed_3ix21.Rmd generates Figure S4D

All other files in this folder are input files for bicycle_classifier_Hcor_Hham_DnDs_3ix21.Rmd

Hcor.Augustus.updated_w_annots.3ix21_final.gff3 available on Janelia Figshare at https://doi.org/10.25378/janelia.17841809.

Please contact Clair Han at hanc@janelia.hhmi.org with questions.

See related materials in collection at https://doi.org/10.25378/janelia.c.5778905.

History