Sequence-based identification of bicycle genes scripts
Code for sequenced-based identification of bicycle genes in all species in Fig 1 from publication "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719.
runlog_blast_v5.5.6.sh: Fig 1, column 1
runlog_hmmer_v5.5.6.sh: Fig 1, column 2
both take orig.bicycle.3ix21.fa as input
runlog_hmmer_within_v5.5.6.sh: Fig 1, column 4
classifier_phylogeny_counts_blast_v5.5.6.Rmd and classifier_phylogeny_counts_v5.5.6.Rmd: for plotting purposes
Please contact Clair Han at hanc@janelia.hhmi.org with questions.
See related materials in collection at https://doi.org/10.25378/janelia.c.5778905.
