Janelia Research Campus
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Stephan Preibisch

Publications

  • Cap-dependent translation initiation monitored in living cells
  • RS-FISH: Precise, interactive, fast, and scalable FISH spot detection
  • Light sheet fluorescence microscopy
  • FRC-QE: A robust and comparable 3D microscopy image quality metric for cleared organoids
  • Image-based representation of massive spatial transcriptomics datasets
  • Dual-view light-sheet imaging through tilted glass interface using a deformable mirror
  • Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function
  • Bioimage Informatics in the context of Drosophila research
  • Efficient Bayesian-based multiview deconvolution
  • MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules
  • Architecture and dynamics of a novel desmosome-endoplasmic reticulum organelle
  • Stochastic transcription in the p53-mediated response to DNA damage is modulated by burst frequency
  • Automated Reconstruction of Whole-Embryo Cell Lineages by Learning from Sparse Annotations
  • Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror
  • Long-term imaging reveals behavioral plasticity during C. elegans dauer exit
  • RS-FISH: Precise, interactive, fast, and scalable FISH spot detection
  • Calibration of Microarray Gene-Expression Data
  • BigDataViewer: visualization and processing for large image data sets
  • Specific and Nonspecific Hybridization of Oligonucleotide Probes on Microarrays
  • Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching
  • TrakEM2 Software for Neural Circuit Reconstruction
  • "Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures
  • Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion
  • Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development
  • An automated workflow for parallel processing of large multiview SPIM recordings
  • "Hook"-calibration of GeneChip-microarrays: Theory and algorithm
  • Fiji: an open-source platform for biological-image analysis
  • Software for bead-based registration of selective plane illumination microscopy data
  • ImgLib2--generic image processing in Java
  • Base Pair Interactions and Hybridization Isotherms of Matched and Mismatched Oligonucleotide Probes on Microarrays
  • GeneChip microarrays—signal intensities, RNA concentrations and probe sequences
  • OpenSPIM: an open-access light-sheet microscopy platform
  • Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons
  • Gene expression divergence recapitulates the developmental hourglass model
  • Restoration of Uneven Illumination in Light Sheet Microscopy Images
  • Globally optimal stitching of tiled 3D microscopic image acquisitions
  • An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy
  • Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking
  • Planar cell polarity signalling regulates cell adhesion properties in progenitors of the zebrafish laterality organ
  • FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids
  • Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations
  • Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages
  • A scalable implementation of the recursive least-squares algorithm for training spiking neural networks
  • A Connectome of the MaleDrosophilaVentral Nerve Cord
  • Architecture and dynamics of a desmosome–endoplasmic reticulum complex
  • Visualizing sarcomere and cellular dynamics in skeletal muscle to improve cell therapies
  • Author Correction: Architecture and dynamics of a desmosome–endoplasmic reticulum complex
  • PEELing: an integrated and user-centric platform for spatially-resolved proteomics data analysis
  • Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos
  • A Connectome of the Male Drosophila Ventral Nerve Cord
  • A Connectome of the Male Drosophila Ventral Nerve Cord

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Co-workers & collaborators

CellMap Project Team

Ashburn, VA

CellMap Project Team

COSEM Project Team

Ashburn, VA, USA

COSEM Project Team

Stephan Preibisch's public data